Organism:
Chalara
Build version:
Kenninghall_wood1 (KW1) assembly - scaffolds
Meta:
Abyss 1.3.4 assembly of KW1, Sample collected by Allan Downie, The John Innes Centre
Created at:
29 October 2013

Experiments attached to this genome

Name Description Created at Features associated
2008-81_6_ers480865-sr_tgac_kw1.raw.vcf 2008-81_6_ers480865-sr_tgac_kw1.raw.vcf 11 September 2014 0
2008-142_5_ers480849-sr_tgac_kw1.raw.vcf 2008-142_5_ers480849-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122505_ers480859-sr_tgac_kw1.raw.vcf CBS_122505_ers480859-sr_tgac_kw1.raw.vcf 11 September 2014 0
RepeatMasker loc complex RepeatMasker low complexity DNA sequences predicted using RepeatMasker open-3.3.0 31 October 2013 41154
RepeatMasker int repeats RepeatMasker interspersed repeat sequences predicted using RepeatMasker open-3.3.0 01 November 2013 37299
LTRharvest De novo predictions of LTR retrotransposons in genome sequences using LTRharvest (genometools vs 1.5.1). Boundary positions of potential LTR retrotransposons are computed. 05 November 2013 5298
TGAC Maker gene models Alternative genebuild was generated with maker 2.10 with the help of trained augustus models. 13 November 2013 106674
2010-189_5_ers480852-sr_tgac_kw1.raw.vcf 2010-189_5_ers480852-sr_tgac_kw1.raw.vcf 11 September 2014 0
2008-148_4_ers480844-sr_tgac_kw1.raw.vcf 2008-148_4_ers480844-sr_tgac_kw1.raw.vcf 11 September 2014 0
2009-86_3_ers480850-sr_tgac_kw1.raw.vcf 2009-86_3_ers480850-sr_tgac_kw1.raw.vcf 11 September 2014 0
2012-24_1_ers480853-sr_tgac_kw1.raw.vcf 2012-24_1_ers480853-sr_tgac_kw1.raw.vcf 11 September 2014 0
2008-152_4_ers480846-sr_tgac_kw1.raw.vcf 2008-152_4_ers480846-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122504_ers480856-sr_tgac_kw1.raw.vcf CBS_122504_ers480856-sr_tgac_kw1.raw.vcf 11 September 2014 0
KW1 mycelia RNAseq genemodels KW1 mycelia RNAseq Trinity assemblies are blasted against Kenninghall_wood1 (KW1) assembly - scaffolds using blastn of blast+ v2.2.28. Unique matches with 80% coverage and less than 10% mis-matches are depicted as gene models 04 December 2013 95552
2011-11_1_ers480847-sr_tgac_kw1.raw.vcf 2011-11_1_ers480847-sr_tgac_kw1.raw.vcf 11 September 2014 0
2010-189_4_ers480851-sr_tgac_kw1.raw.vcf 2010-189_4_ers480851-sr_tgac_kw1.raw.vcf 11 September 2014 0
2012-42_1_1_ers480855-sr_tgac_kw1.raw.vcf 2012-42_1_1_ers480855-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122191_ers480860-sr_tgac_kw1.raw.vcf CBS_122191_ers480860-sr_tgac_kw1.raw.vcf 11 September 2014 0
TGAC Augustus Gene Models Augustus v2.5.5 ab initio gene models with the 4 cross species protein alignments (Amorphotheca resinae v1.0, Botrytis cinerea v1.0, Oidiodendron maius Zn v1.0 and Sclerotinia sclerotiorum v1.0). 29 January 2014 154857
CBS_122503_ers480858-sr_tgac_kw1.raw.vcf CBS_122503_ers480858-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122507_ers480857-sr_tgac_kw1.raw.vcf CBS_122507_ers480857-sr_tgac_kw1.raw.vcf 11 September 2014 0
FON-M-1_ers480864-sr_tgac_kw1.raw.vcf FON-M-1_ers480864-sr_tgac_kw1.raw.vcf 11 September 2014 0
GIR-M-2_ers480862-sr_tgac_kw1.raw.vcf GIR-M-2_ers480862-sr_tgac_kw1.raw.vcf 11 September 2014 0
LAN-M-1_ers480863-sr_tgac_kw1.raw.vcf LAN-M-1_ers480863-sr_tgac_kw1.raw.vcf 11 September 2014 0
wayland_wood1_vs_KW1-tgac.vcf wayland_wood1_vs_KW1-tgac.vcf 14 July 2014 0
2012-38_2_2_ers480854-sr_tgac_kw1.raw.vcf 2012-38_2_2_ers480854-sr_tgac_kw1.raw.vcf 11 September 2014 0
foxley_wood1_vs_KW1-tgac.vcf foxley_wood1_vs_KW1-tgac.vcf 14 July 2014 0
lolly_moor1_vs_KW1-tgac.vcf lolly_moor1_vs_KW1-tgac.vcf 14 July 2014 0
2008-125_2_ers480845-sr_tgac_kw1.raw.vcf 2008-125_2_ers480845-sr_tgac_kw1.raw.vcf 10 September 2014 0
2008-139_1_ers480848-sr_tgac_kw1.raw.vcf 2008-139_1_ers480848-sr_tgac_kw1.raw.vcf 10 September 2014 0
LSVM82_ers480861-sr_tgac_kw1.raw.vcf LSVM82_ers480861-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc108_lib6764-sr_tgac_kw1.raw.vcf FERA_cc108_lib6764-sr_tgac_kw1.raw.vcf 11 September 2014 0
MIG-M-1_ers480843-sr_tgac_kw1.raw.vcf MIG-M-1_ers480843-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc118_lib6767-sr_tgac_kw1.raw.vcf FERA_cc118_lib6767-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc087_lib6754-sr_tgac_kw1.raw.vcf FERA_cc087_lib6754-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc086_lib6753-sr_tgac_kw1.raw.vcf FERA_cc086_lib6753-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc111_lib6765-sr_tgac_kw1.raw.vcf FERA_cc111_lib6765-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc088_lib6755-sr_tgac_kw1.raw.vcf FERA_cc088_lib6755-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc096_lib6757-sr_tgac_kw1.raw.vcf FERA_cc096_lib6757-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc134_lib6771-sr_tgac_kw1.raw.vcf FERA_cc134_lib6771-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc099_lib6759-sr_tgac_kw1.raw.vcf FERA_cc099_lib6759-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc119_lib6768-sr_tgac_kw1.raw.vcf FERA_cc119_lib6768-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc101_lib6760-sr_tgac_kw1.raw.vcf FERA_cc101_lib6760-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc105_lib6761-sr_tgac_kw1.raw.vcf FERA_cc105_lib6761-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc121_lib6769-sr_tgac_kw1.raw.vcf FERA_cc121_lib6769-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc106_lib6762-sr_tgac_kw1.raw.vcf FERA_cc106_lib6762-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc133_lib6770-sr_tgac_kw1.raw.vcf FERA_cc133_lib6770-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc139_lib6772-sr_tgac_kw1.raw.vcf FERA_cc139_lib6772-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc107_lib6763-sr_tgac_kw1.raw.vcf FERA_cc107_lib6763-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc095_lib6756-sr_tgac_kw1.raw.vcf FERA_cc095_lib6756-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc097_lib6758-sr_tgac_kw1.raw.vcf FERA_cc097_lib6758-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc113_lib6766-sr_tgac_kw1.raw.vcf FERA_cc113_lib6766-sr_tgac_kw1.raw.vcf 11 September 2014 0

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