Name Organism Build version Description Created at Features associated
2008-81_6_ers480865-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2008-81_6_ers480865-sr_tgac_kw1.raw.vcf 11 September 2014 0
2008-142_5_ers480849-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2008-142_5_ers480849-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122505_ers480859-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds CBS_122505_ers480859-sr_tgac_kw1.raw.vcf 11 September 2014 0
RepeatMasker loc complex Chalara Kenninghall_wood1 (KW1) assembly - scaffolds RepeatMasker low complexity DNA sequences predicted using RepeatMasker open-3.3.0 31 October 2013 41154
RepeatMasker int repeats Chalara Kenninghall_wood1 (KW1) assembly - scaffolds RepeatMasker interspersed repeat sequences predicted using RepeatMasker open-3.3.0 01 November 2013 37299
LTRharvest Chalara Kenninghall_wood1 (KW1) assembly - scaffolds De novo predictions of LTR retrotransposons in genome sequences using LTRharvest (genometools vs 1.5.1). Boundary positions of potential LTR retrotransposons are computed. 05 November 2013 5298
TGAC Maker gene models Chalara Kenninghall_wood1 (KW1) assembly - scaffolds Alternative genebuild was generated with maker 2.10 with the help of trained augustus models. 13 November 2013 106674
FERA_cc113_lib6766-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc113_lib6766-sr_tgac_kw1.raw.vcf 11 September 2014 0
2010-189_5_ers480852-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2010-189_5_ers480852-sr_tgac_kw1.raw.vcf 11 September 2014 0
2008-148_4_ers480844-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2008-148_4_ers480844-sr_tgac_kw1.raw.vcf 11 September 2014 0
2009-86_3_ers480850-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2009-86_3_ers480850-sr_tgac_kw1.raw.vcf 11 September 2014 0
2012-24_1_ers480853-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2012-24_1_ers480853-sr_tgac_kw1.raw.vcf 11 September 2014 0
2008-152_4_ers480846-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2008-152_4_ers480846-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122504_ers480856-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds CBS_122504_ers480856-sr_tgac_kw1.raw.vcf 11 September 2014 0
KW1 mycelia RNAseq genemodels Chalara Kenninghall_wood1 (KW1) assembly - scaffolds KW1 mycelia RNAseq Trinity assemblies are blasted against Kenninghall_wood1 (KW1) assembly - scaffolds using blastn of blast+ v2.2.28. Unique matches with 80% coverage and less than 10% mis-matches are depicted as gene models 04 December 2013 95552
2011-11_1_ers480847-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2011-11_1_ers480847-sr_tgac_kw1.raw.vcf 11 September 2014 0
2010-189_4_ers480851-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2010-189_4_ers480851-sr_tgac_kw1.raw.vcf 11 September 2014 0
2012-42_1_1_ers480855-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2012-42_1_1_ers480855-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122191_ers480860-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds CBS_122191_ers480860-sr_tgac_kw1.raw.vcf 11 September 2014 0
TGAC Augustus Gene Models Chalara Kenninghall_wood1 (KW1) assembly - scaffolds Augustus v2.5.5 ab initio gene models with the 4 cross species protein alignments (Amorphotheca resinae v1.0, Botrytis cinerea v1.0, Oidiodendron maius Zn v1.0 and Sclerotinia sclerotiorum v1.0). 29 January 2014 154857
FERA_cc097_lib6758-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc097_lib6758-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122503_ers480858-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds CBS_122503_ers480858-sr_tgac_kw1.raw.vcf 11 September 2014 0
CBS_122507_ers480857-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds CBS_122507_ers480857-sr_tgac_kw1.raw.vcf 11 September 2014 0
FON-M-1_ers480864-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FON-M-1_ers480864-sr_tgac_kw1.raw.vcf 11 September 2014 0
GIR-M-2_ers480862-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds GIR-M-2_ers480862-sr_tgac_kw1.raw.vcf 11 September 2014 0
LAN-M-1_ers480863-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds LAN-M-1_ers480863-sr_tgac_kw1.raw.vcf 11 September 2014 0
upton_broad_and_marshes_vs_tgac1.vcf Chalara Kenninghall_wood1 (KW1) contigs upton_broad_and_marshes_vs_tgac1.vcf 10 July 2014 0
wayland_wood1_vs_KW1-tgac.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds wayland_wood1_vs_KW1-tgac.vcf 14 July 2014 0
2012-38_2_2_ers480854-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2012-38_2_2_ers480854-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc095_lib6756-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc095_lib6756-sr_tgac_kw1.raw.vcf 11 September 2014 0
lolly_moor1_vs_KW1-tgac.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds lolly_moor1_vs_KW1-tgac.vcf 14 July 2014 0
ashwellthorpe1_vs_tgac1.vcf Chalara Kenninghall_wood1 (KW1) contigs ashwellthorpe1_vs_tgac1.vcf 10 July 2014 0
ashwellthorpe2_vs_tgac1.vcf Chalara Kenninghall_wood1 (KW1) contigs ashwellthorpe2_vs_tgac1.vcf 10 July 2014 0
2008-125_2_ers480845-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2008-125_2_ers480845-sr_tgac_kw1.raw.vcf 10 September 2014 0
2008-139_1_ers480848-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds 2008-139_1_ers480848-sr_tgac_kw1.raw.vcf 10 September 2014 0
LSVM82_ers480861-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds LSVM82_ers480861-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc108_lib6764-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc108_lib6764-sr_tgac_kw1.raw.vcf 11 September 2014 0
MIG-M-1_ers480843-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds MIG-M-1_ers480843-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc118_lib6767-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc118_lib6767-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc087_lib6754-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc087_lib6754-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc086_lib6753-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc086_lib6753-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc111_lib6765-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc111_lib6765-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc088_lib6755-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc088_lib6755-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc096_lib6757-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc096_lib6757-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc134_lib6771-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc134_lib6771-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc099_lib6759-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc099_lib6759-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc119_lib6768-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc119_lib6768-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc101_lib6760-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc101_lib6760-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc105_lib6761-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc105_lib6761-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc121_lib6769-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc121_lib6769-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc106_lib6762-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc106_lib6762-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc133_lib6770-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc133_lib6770-sr_tgac_kw1.raw.vcf 11 September 2014 0
FERA_cc139_lib6772-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc139_lib6772-sr_tgac_kw1.raw.vcf 11 September 2014 0
Ashwellthorpe2 (AT2) RNA-seq vs KW1 Chalara Kenninghall_wood1 (KW1) contigs AT2 RNA-seq data aligned to KW1 reference 30 June 2014 0
Test KW1 v1 scaffolds on v2 genome5 Chalara KW1 version 2 scaffolds KW1 version1 scaffolds are blasted against version2 scaffolds and represented as a gff file 31 March 2015 8843
FERA_cc107_lib6763-sr_tgac_kw1.raw.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds FERA_cc107_lib6763-sr_tgac_kw1.raw.vcf 11 September 2014 0
foxley_wood1_vs_KW1-tgac.vcf Chalara Kenninghall_wood1 (KW1) assembly - scaffolds foxley_wood1_vs_KW1-tgac.vcf 14 July 2014 0
Tree35 RNA-seq genemodels Ash TGAC Nornex Tree 35 Assembly v1 - scaffolds Tree35 RNA-seq Trinity assemblies are blasted against TGAC Nornex Tree 35 Assembly v1 scaffolds using blastn of blast+ v2.2.28. Unique matches are depicted as gene models 30 January 2014 352207
ATU1 RNA-seq genemodels Ash TGAC Nornex Tree 35 Assembly v1 - scaffolds ATU1 RNA-seq Trinity assemblies are blasted against TGAC Nornex Tree 35 Assembly v1 scaffolds using blastn of blast+ v2.2.28. Unique matches are depicted as gene models 19 November 2013 144186